Applications and Software at Daresbury
Modules Available
We have provided environment modules on the system split broadly into three classes as follows:
- Compiler plus associated serial and SMP libraries (e.g. blas, lapack, hdf5, etc.). These are sub-divided into compiler distro and version number.
- MPI plus associated distributed memory parallel libraries (e.g. OpenMPI, SCALAPACK, etc.). These are subdivided by version and compiler built against.
- Application packages which are sufficient to run a single application as an end user.
Compiler
All compilers assume 64-bit for Linux with OpenMP (SMP) thread support.
compiler/gnu/4.2.1 |
Gnu compilers v4.2.1 |
compiler/intel/11.0 |
Intel compilers v11.0 |
compiler/pgi/8.0-3 |
PGI compilers v8.0 r3 |
Libraries bundled with these modules are as follows.
libgoto |
Goto BLAS, see TACC Web site |
liblapack |
LAPACK, see NetLib Web site |
libhdf5 |
HDF5 (not yet installed) |
OpenMPI
We are currently using OpenMPI v1.4.1. Modules for v1.3.1 r1 and v1.3.3-1 are available for legacy codes.
openmpi/1.4.1/* |
OpenMPI for Gnu, PGI or Intel compiler |
openmpi/1.3.3-1/* |
OpenMPI for Gnu, PGI or Intel compiler |
openmpi/1.3.1-1/pgi |
OpenMPI for PGI compiler |
Libraries bundled with these modules are as follows.
...
MPICH-2
mpich/2-1.2.1/* |
MPICH-2 for Gnu, PGI or Intel compiler |
Packages
cp2k |
CP2K Car-Parrinello code with GCC-4.4.1 and OpenMPI-1.4.1 - serial and parallel optimsed for 64-bit Linux (4/5/2010) |
openfoam |
OpenFOAM-1.6 with OpenMPI-1.3.3 and Gnu compiler - installed from 64-bit binary. |
pelegant |
loads appropriate paths for the Pelegant application compiled with Gnu compiler, Goto BLAS and LAPACK |
sabre |
loads appropriate paths for the Sabre-6.0 application sabe_p.out compiled with PGI compiler |
saturne-1.4/* |
Code_Saturne-1.4 with Gnu, PGI or Intel compiler and OpenMPI-1.3.1 |
scalapack/* |
ScaLAPACK with Gnu, PGI or Intel compiler and OpenMPI-1.4.1. Includes BLAS, BLACS and LAPACK |
visit |
VisIT - visualisation suite |
vorpal |
Vorpal - licensed software from TX-Corp. (currently being installed) |
Others
dot |
appends a dot to the PATH so that local executables will be seen |
use.own |
allow users to add their own modules to MODULEPATH |
Running Applications
Libraries
- BLAS
- BLACS
- FFTW-3.2.2
- Goto BLAS
- LAPACK
- MPICH-2-1.2.1 (module)
- OpenMPI-1.3.1 (module)
- OpenMPI-1.4.1 (module)
- ScaLAPACK-1.8.0 (module)
General Applications
- BLAST
- CASTEP
- Code_Saturne (module)
- CP2K (module)
- CRYSTAL
- DALTON
- DL_EXCURVE
- DL_POLY
- Elegant/ Pelegant (module)
- EORF
- EXONERATE
- FASTA
- FLAME
- GAMESS_UK
- GULP
- OpenFOAM (module)
- OSSIA
- NW_Chem
- QDVE
- SABRE (module)
- SIESTA
- SMEAGOL
- VisIT (module)
- Vorpal
Grid Software
- AgentX
- Condor-7.2.1
- FoX
- Globus-4.2.1 (module)
- GROWL
- RCommands
- RGem
- RMCS
- SRB